Environmental DNA metabarcoding of fish and amphibian occurrence in created biodiversity wetlands in Uppland, Sweden
SND-ID: 2021-188-1. Version: 1. DOI: https://doi.org/10.5878/gzq7-8q71
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Creator/Principal investigator(s)
Ineta Kačergytė
- Swedish University of Agricultural Sciences, Department of Ecology
Research principal
Swedish University of Agricultural Sciences
- Swedish University of Agricultural Sciences, Department of Ecology, Landscape Ecology Unit
Principal's reference number
SLU.ekol.2021.4.4.IÄ-3
Description
The conducted study was done to determine the fish and amphibian occurrence patterns in created wetlands for biodiversity. The geographical study units were individual wetlands in Uppland, Sweden. For each wetland, the data contains all environmental variables considered and estimated within the study: Landscape forest within 1 km buffer, Size, Water vegetation, Flooded area, Year of creation, Connectivity to other wetlands. The data of amphibians and fish were obtained using environmental DNA metabarcoding, where a number of sequences were obtained. We report only whether the species eDNA was detected in a wetland or not (1/0).
Data: data contains fish and amphibian occurrence data in created wetlands in Uppland, Sweden.
Data collection description:
Fish and amphibian occurrence in 52 created biodiversity wetlands in Sweden determined by using environmental DNA metabarcoding from water samples. This took place during June and July year 2018.
The variables are described in detail in the documentation file.
A file with geographical coordinates for the wetlands can be found in the linked da
Data: data contains fish and amphibian occurrence data in created wetlands in Uppland, Sweden.
Data collection description:
Fish and amphibian occurrence in 52 created biodiversity wetlands in Sweden determined by using environmental DNA metabarcoding from water samples. This took place during June and July year 2018.
The variables are described in detail in the documentation file.
A file with geographical coordinates for the wetlands can be found in the linked data repository, where Site_ID could be used as a common identifier.
A raw data file including the number of DNA reads can be provided upon request. Show less..
Data contains personal data
No
Language
Time period(s) investigated
2018-06-05 – 2018-07-29
Variables
33
Data format / data structure
Geographic spread
Geographic location: Stockholm County, Uppland Province
Responsible department/unit
Swedish University of Agricultural Sciences, Department of Ecology, Landscape Ecology Unit
Research area
Environmental sciences (Standard för svensk indelning av forskningsämnen 2011)
Ecology (Standard för svensk indelning av forskningsämnen 2011)
Keywords
Kačergytė, I., Petersson, E., Arlt, D., Hellström, M., Knape, J., Spens, J., Żmihorski, M. & Pärt, T. (2021). Environmental DNA metabarcoding elucidates patterns of fish colonisation and co‐occurrences with amphibians in temperate wetlands created for biodiversity. Freshwater Biology. 66(10), 1915-1929.
DOI:
https://doi.org/10.1111/fwb.13800
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